SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping

Damla Senol Cali, Konstantinos Kanellopoulos, Joel Lindegger, Zulal Bingol, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri Ghiasi, Gagandeep Singh, Juan Gomez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
June 2022
Paper Source Code ISCA'22 Talk and Q/A Video (22 minutes) Talk Slides (PDF) Talk Slides (PPTX)
Type
Conference paper
Publication
In Proceedings of the 49th International Symposium on Computer Architecture (ISCA)
Damla Senol Cali
Staff Software Engineer, Hardware Acceleration, Bionano Genomics

My research interests include HW/SW co-design for bioinformatics applications and genomic data analysis.